Waldman, J., R. Daniels, M. Hickerson, and I. Wirgin. 2009. Response to Comment: Mitochondrial DNA analysis indicates sea lampreys are indigenous to Lake Ontario. Transactions of the American Fisheries Society 138:1190-1197.
Limburg, K.E., and J.R. Waldman. 2009. Dramatic declines in North Atlantic diadromous fishes. Bioscience 59:955-965.
Waldman, J.R., C. Grunwald, and I. Wirgin. 2008. Sea lamprey Petromyzon marinus, an exception to the rule of homing in anadromous fishes. Biology Letters 4:659-662.
Wirgin, I., C. Grunwald, J. Stabile, and J.R. Waldman. 2008. A genetic contribution to delineation of distinct population segments of shortnose sturgeon (Acipenser brevirostrum). Conservation Genetics 9:1111-1124.
Waldman, J. 2008. The world’s diadromous fishes: Resetting shifted baselines. Pages 151-163 in State of the Wild: A Global Portrait of Wildlife, Wildlands, and Oceans 2008, Wildlife Conservation Society, New York.
Waldman, J.R., P. Doukakis, and I. Wirgin. 2008. Molecular analysis as a conservation tool for monitoring the trade of North American sturgeons and paddlefish. Journal of Applied Ichthyology 24 (Suppl. 1):20-28.
Grunwald, C., L. Maceda, J. Waldman, J. Stabile, and I. Wirgin. 2007. Conservation of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus: delineation of stock structure and distinct population segments. Conservation Genetics.
Wirgin, I., C. Grunwald, J. Stabile, and J. Waldman. 2007. Genetic evidence for mid-Atlantic coast relict Atlantic sturgeon stocks. North American Journal of Fisheries Management 27:1214-1229.
Wirgin, I., A.I. Kovach, L. Maceda, N.K. Roy, J. Waldman, D.L. Berlinsky. 2007. Stock identification of Atlantic cod in U.S. waters using microsatellite and single nucleotide polymorphism DNA analyses. Transactions of the American Fisheries Society 136:375-391.
Waldman, J.R., C. Grunwald, and I. Wirgin. 2006. Evaluation of the native status of sea lamprey Petromyzon marinus in Lake Champlain based on mitochondrial DNA sequencing analysis. Transactions of the American Fisheries Society 135:1076-1085.
Wirgin, I., and J. Waldman. 2006. Bioaccumulation and toxicities of aromatic hydrocarbon contaminants at different trophic levels of the Hudson River Ecosystem. Pages 1552-1568 in W.N. Rom, editor. Environmental and Occupational Medicine, 4th Edition, Lippincott-Raven Publishers.
Dunning, D.J., J.R. Waldman, Q.E. Ross, M.T. Mattson. 2006. Dispersal of Age-2+ striped bass out of the Hudson River. American Fisheries Society Symposium Series 51:287-294.
Waldman, J.R., T. Lake, and R.E. Schmidt. 2006. Biodiversity and zoogeography of Hudson Estuary Fishes. American Fisheries Society Symposium Series 51:129-150.
Waldman, J.R., K.E. Limburg, and D.L. Strayer. 2006. The Hudson River environment and its dynamic fish community. American Fisheries Society Symposium Series 51:1-7.
Limburg, K., J. Waldman, A. Kahnle, and K. Hattala. 2006. Fisheries and fisheries management of the Hudson River estuary. Pages 189-204 in J.S. Levinton and J.R. Waldman, editors. The Hudson River Estuary, Cambridge University Press.
Waldman, J.R. 2006. The diadromous fish fauna of the Hudson River: life histories, conservation concerns, and research avenues. Pages 171-188 in J.S. Levinton and J.R. Waldman, editors. The Hudson River Estuary, Cambridge University Press.
Wirgin, I., C. Grunwald, E. Carlson, J. Stabile, D.L. Peterson, and J. Waldman. 2005. Range-wide population structure of shortnose sturgeon Acipenser brevirostrum based on sequence analysis of the mitochondrial DNA control region. Estuaries 28:406-421.
Wirgin, I., D. Currie, N. Roy, L. Maceda, and J.R. Waldman. 2005. Introgression of nuclear DNA (nDNA) alleles of stocked Atlantic coast striped bass with the last remaining native Gulf of Mexico population. North American Journal of Fisheries Management 25:464-474.
Wirgin, I., and J.R. Waldman. 2004. Resistance to contaminants in North American fish populations. Mutation Research 552:73-100.
Wirgin, I., and J.R. Waldman. 2004. Use of nuclear DNA in stock identification: single-copy and repetitive sequence markers. Pages 321-359 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors. Stock Identification Methods, Elsevier, San Diego.
Waldman, J.R. 2004. Meristics. Pages 191-201 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors. Stock Identification Methods, Elsevier, San Diego.
Waldman, J.R. 2004. Definition of stocks: an evolving concept. Pages 5-14 in S. X. Cadrin, K. Friedland, and J. R. Waldman, editors. Stock Identification Methods, Elsevier, San Diego.
Waldman, J.R., C. Grunwald, N.K. Roy, and I.I. Wirgin. 2004. Mitochondrial DNA analysis indicates sea lamprey (Petromyzon marinus) indigenous to Lake Ontario. Transactions of the American Fisheries Society 133:950-960.
Rodríguez-Muñoz, R., J.R. Waldman, C. Grunwald, N. K. Roy, and I. Wirgin. 2004. Mitochondrial DNA variation in sea lamprey between North American and Spanish rivers. Journal of Fish Biology 64:783-787.
Waldman, J.R., and K.E. Limburg. 2003. The world’s shads: summary of their status, conservation, and research needs. American Fisheries Society Symposium Series 35:363-369.
Nolan, K.A., J.R. Waldman, and I.I. Wirgin. 2003. Intraspecific and interspecific molecular differentiation of American shad and Alabama shad: a synthesis. American Fisheries Society Symposium Series 35:295-302.
Navodaru, I., and J.R. Waldman. 2003. Shads of Eastern Europe from the Black Sea: review of species and fisheries. American Fisheries Society Symposium Series 35:69-76.
Waldman, J.R. 2003. Introduction to the shads. American Fisheries Society Symposium Series 35:3-9.
Wirgin, I., J. Stabile, J. Waldman, B. Lubinski, and T. King. 2002. Comparison of mitochondrial DNA control region sequence and microsatellite analyses in determining population structure and homing fidelity in Atlantic sturgeon Acipenser oxyrinchus. Journal of Applied Ichthyology 18:313-319.
Waldman, J.R., C. Grunwald, J. Stabile, and I.I. Wirgin. 2002. Impacts of life history and biogeography on the genetic stock structure of Atlantic sturgeon Acipenser oxyrinchus oxyrinchus, Gulf sturgeon A. o. desotoi, and shortnose sturgeon A. brevirostrum. Journal of Applied Ichthyology 18:509-518.
Ludwig, A., L. Debus, D. Lieckfeldt, I. Wirgin, N. Benecke, I. Jenneckens, P. Williot, J.R. Waldman, and C. Pitra. 2002. When the American sea sturgeon swam east. Nature 419:447-448.
Grunwald, C., J. Stabile, J.R. Waldman, R. Gross, and I.I. Wirgin. 2002. Population genetics of shortnose sturgeon, Acipenser brevirostrum, based on sequencing of the mitochondrial DNA control region. Molecular Ecology 11:1885-1898.
Briggs, P.T., and J.R. Waldman. 2002. Annotated list of fishes reported from the marine waters of New York. Northeastern Naturalist 9(1):47-80.